{"text_format":"5","workbook":"xlsx","n_sheets":7,"sheets":["dataset","datasource","sample","expdesign","method","notes","sample_orig_unordered"],"props":{"creator":"Sudhansu Dash","last_modified_by":"Sudhansu Dash","company":"NCGR"},"read":"whole","wrapped":"gz","date_system":"1904"}

{"sheet":"dataset","index":0,"n_rows":32,"n_cols":3,"rows_kept":32}
["#","#DATASET"]
["#","#SECTION: For DataStore and LIS database"]
["#","#"]
["#","#accession_no"]
[null,"ACCESSION_NO","vigun1"]
["#","#Name:Title"]
[null,"NAME","Cowpea gene expression atlas from reference genotype IT97K-499-35."]
["#","#Shortname: For label in website"]
[null,"SHORTNAME","Cowpea expression atlas"]
["#","#As in DataStore Expected to be the same in LIS Chado)"]
[null,"GENOME","vigun.IT97K-499-35.gnm1.ann1"]
["#","#Description for LIS"]
[null,"DESCRIPTION","The black-eyed pea reference genotype,IT97K-499-35 has been used to generate a gene expression atlas of the major plant tissues (leaf, root, stem, flower, pod and seed), with a developmental time series for pods and seeds. This includes 27 samples including replications for some."]
["#","#Date data analysed"]
[null,"ANALYSIS_DATE","Nov 2017"]
["#","#????Only after loading OR should be in database auto-updated. **Think and change"]
[null,"LOAD_DATE"]
["#","#"]
["#"]
["#"]
["#","#SECTION: For G/Jbrowse"]
["#","#"]
["#","#Browser dir name:  **Is DATASET_SHORTNAME in scripts"]
[null,"BROW_DIRNAME"]
["#","#"]
["#","#Browser dataset name: May use SHORTNAME.  **Is DATASET_LONGNAME in scripts"]
["#","#Browser genome version: Is  GENOME_VERSION in scripts"]
[null,"BROW_GENOME_VER","Vu1.1"]
["#","#Browser LG_ABBREVIATION: Pseudomolecule abbreviation in GBrowse. Ex: Pv or Ca or Cc, etc."]
[null," LG_ABBREVIATION"]
["#","#Local working dir: Location of data and file processing"]
[null,"LOCAL_WORKING_DIR","vigun1-SRP108689"]

{"sheet":"datasource","index":1,"n_rows":26,"n_cols":3,"rows_kept":26}
["#","#DATASOURCE"]
["#","#"]
["#","#Name, descriptive (max 250 char)"]
[null,"NAME","Black-eyed pea gene expression atlas of the major plant tissues in the reference genotype IT97K-499-35"]
["#","#Shortname: max 64 char"]
[null,"SHORTNAME","Black-eyed pea gene expression atlas (IT97K-499-35)"]
["#","#Origin: ex. SRA, GEO, A labname, etc."]
[null,"ORIGIN","SRA"]
["# ","#Description: our description if needed"]
[null,"DESCRIPTION","The black-eyed pea reference genotype has been used to generate a gene expression atlas of the major plant tissues (i.e. leaf, root, stem, flower, pod and seed), with a developmental time series for pods and seeds."]
["#","#NCBI BioProj acc, PRJNA num"]
[null,"BIOPROJ_ACC","PRJNA389300"]
["#","#NCBI BioProj Title"]
[null,"BIOPROJ_TITLE","Black-eyed pea gene expression atlas, Apr 11 '17"]
["#","#NCBI BioProj description/ abstract(?)"]
[null,"BIOPROJ_DESCRIPTION","The black-eyed pea reference genotype has been used to generate a gene expression atlas of the major plant tissues (i.e. leaf, root, stem, flower, pod and seed), with a developmental time series for pods and seeds. From these various organs, 27 cDNA libraries were generated and sequenced, resulting in more than one billion reads. Following filtering, these reads were de novo assembled into 36 529 transcript sequences that were annotated and quantified across the different tissues. A set of 24 866 unique transcript sequences, called Unigenes, was identified."]
["#","#NCBI SRP number"]
[null,"SRA_PROJ_ACC","SRP108689"]
["#","# GEO series if exists"]
[null,"GEO_SERIES"]
["#","#Associated publication at NCBI"]
[null,"BIOPROJ_PUBLICATION","Yao S, Jiang C, Huang Z, Torres-Jerez I, Chang J, Zhang H, Udvardi M, Liu R,\nVerdier J. The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo\nassembly and quantification of RNA-seq data provides insights into seed\nmaturation mechanisms. Plant J. 2016 Oct;88(2):318-327. doi: 10.1111/tpj.13279.\nPubMed PMID: 27448251."]
["#","#Link to Pub"]
[null,"PUB_LINK","http://onlinelibrary.wiley.com/doi/10.1111/tpj.13279/abstract"]
["#","#Link to full publication"]
[null,"PUB_FULLLINK","http://onlinelibrary.wiley.com/doi/10.1111/tpj.13279/full"]

{"sheet":"sample","index":2,"n_rows":33,"n_cols":19,"rows_kept":33}
["#SAMPLE"]
["#"]
["#Hints:"]
["#sample display name","Lookup key for data column (=SRR no)","unique name for LIS Chado","Descriptive","Exp design: factors-rep combinations","tissue/organ/plant part",{"$nulls":4},"Chado spelling","sub-spp, cv-type","strain, line, cultivar, genotype","Other_attributes, place-holder, add extra columns","SRR(not in recc)","SAMN number","SRS number","PRJN number","SRP number"]
["sample_name","key","sample_uniquename","description","treatment","tissue","dev_stage","age","rep","library_name","organism","infraspecies","cultivar","other","sra_run","biosample_accession","sra_accession","bioproject_accession","sra_study"]
["flower rep1 (SRR5648395)","SRR5648395","flower rep1 (SRR5648395)","flower at Flowering rep1 (SRR5648395)","flower rep1","flower","Flowering",null,"rep1","Flower_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648395","SAMN07194882","SAMN07194882","PRJNA389300","SRP108689"]
["flower rep2 (SRR5648394)","SRR5648394","flower rep2 (SRR5648394)","flower at Flowering rep2 (SRR5648394)","flower rep2","flower","Flowering",null,"rep2","Flower_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648394","SAMN07194883","SAMN07194883","PRJNA389300","SRP108689"]
["flower rep3 (SRR5648393)","SRR5648393","flower rep3 (SRR5648393)","flower at Flowering rep3 (SRR5648393)","flower rep3","flower","Flowering",null,"rep3","Flower_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648393","SAMN07194884","SAMN07194884","PRJNA389300","SRP108689"]
["leaf 5 wk rep1 (SRR5648392)","SRR5648392","leaf 5 wk rep1 (SRR5648392)","leaf at 5-week-old plants rep1 (SRR5648392)","leaf 5 wk rep1","leaf","5-week-old plants",null,"rep1","Leaf_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648392","SAMN07194885","SAMN07194885","PRJNA389300","SRP108689"]
["leaf 5 wk rep2 (SRR5648399)","SRR5648399","leaf 5 wk rep2 (SRR5648399)","leaf at 5-week-old plants rep2 (SRR5648399)","leaf 5 wk rep2","leaf","5-week-old plants",null,"rep2","Leaf_Rep2_MiSeq","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648399","SAMN07194886","SAMN07194886","PRJNA389300","SRP108689"]
["leaf 5 wk rep3 (SRR5648398)","SRR5648398","leaf 5 wk rep3 (SRR5648398)","leaf at 5-week-old plants rep3 (SRR5648398)","leaf 5 wk rep3","leaf","5-week-old plants",null,"rep3","Leaf_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648398","SAMN07194887","SAMN07194887","PRJNA389300","SRP108689"]
["Pod 6 dap rep1 (SRR5648396)","SRR5648396","Pod 6 dap rep1 (SRR5648396)","Pod at 6 days after pollination rep1 (SRR5648396)","Pod 6 dap rep1","Pod","6 days after pollination",null,"rep1","P6_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648396","SAMN07194889","SAMN07194889","PRJNA389300","SRP108689"]
["Pod 10 dap rep1 (SRR5648391)","SRR5648391","Pod 10 dap rep1 (SRR5648391)","Pod at 10 days after pollination rep1 (SRR5648391)","Pod 10 dap rep1","Pod","10 days after pollination",null,"rep1","P10_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648391","SAMN07194890","SAMN07194890","PRJNA389300","SRP108689"]
["Pod 16 dap rep1 (SRR5648390)","SRR5648390","Pod 16 dap rep1 (SRR5648390)","Pod at 16 days after pollination rep1 (SRR5648390)","Pod 16 dap rep1","Pod","16 days after pollination",null,"rep1","P16_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648390","SAMN07194891","SAMN07194891","PRJNA389300","SRP108689"]
["Root 5 wk rep1 (SRR5648382)","SRR5648382","Root 5 wk rep1 (SRR5648382)","Root at 5-week-old plants rep1 (SRR5648382)","Root 5 wk rep1","Root","5-week-old plants",null,"rep1","Root_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648382","SAMN07194892","SAMN07194892","PRJNA389300","SRP108689"]
["Root 5 wk rep2 (SRR5648383)","SRR5648383","Root 5 wk rep2 (SRR5648383)","Root at 5-week-old plants rep2 (SRR5648383)","Root 5 wk rep2","Root","5-week-old plants",null,"rep2","Root_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648383","SAMN07194893","SAMN07194893","PRJNA389300","SRP108689"]
["Root 5 wk rep3 (SRR5648385)","SRR5648385","Root 5 wk rep3 (SRR5648385)","Root at 5-week-old plants rep3 (SRR5648385)","Root 5 wk rep3","Root","5-week-old plants",null,"rep3","Root_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648385","SAMN07194894","SAMN07194894","PRJNA389300","SRP108689"]
["Seed 8 dap rep1 (SRR5648384)","SRR5648384","Seed 8 dap rep1 (SRR5648384)","Seed at 8 days after pollination rep1 (SRR5648384)","Seed 8 dap rep1","Seed","8 days after pollination",null,"rep1","S8_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648384","SAMN07194895","SAMN07194895","PRJNA389300","SRP108689"]
["Seed 8 dap rep2 (SRR5648387)","SRR5648387","Seed 8 dap rep2 (SRR5648387)","Seed at 8 days after pollination rep2 (SRR5648387)","Seed 8 dap rep2","Seed","8 days after pollination",null,"rep2","S8_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648387","SAMN07194896","SAMN07194896","PRJNA389300","SRP108689"]
["Seed 8 dap rep3 (SRR5648386)","SRR5648386","Seed 8 dap rep3 (SRR5648386)","Seed at 8 days after pollination rep3 (SRR5648386)","Seed 8 dap rep3","Seed","8 days after pollination",null,"rep3","S8_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648386","SAMN07194897","SAMN07194897","PRJNA389300","SRP108689"]
["Seed 10 dap rep1 (SRR5648389)","SRR5648389","Seed 10 dap rep1 (SRR5648389)","Seed at 10 days after pollination rep1 (SRR5648389)","Seed 10 dap rep1","Seed","10 days after pollination",null,"rep1","S10_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648389","SAMN07194898","SAMN07194898","PRJNA389300","SRP108689"]
["Seed 10 dap rep2 (SRR5648388)","SRR5648388","Seed 10 dap rep2 (SRR5648388)","Seed at 10 days after pollination rep2 (SRR5648388)","Seed 10 dap rep2","Seed","10 days after pollination",null,"rep2","S10_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648388","SAMN07194899","SAMN07194899","PRJNA389300","SRP108689"]
["Seed 10 dap rep3 (SRR5648381)","SRR5648381","Seed 10 dap rep3 (SRR5648381)","Seed at 10 days after pollination rep3 (SRR5648381)","Seed 10 dap rep3","Seed","10 days after pollination",null,"rep3","S10_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648381","SAMN07194900","SAMN07194900","PRJNA389300","SRP108689"]
["Seed 14 dap rep1 (SRR5648380)","SRR5648380","Seed 14 dap rep1 (SRR5648380)","Seed at 14 days after pollination rep1 (SRR5648380)","Seed 14 dap rep1","Seed","14 days after pollination",null,"rep1","S14_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648380","SAMN07194901","SAMN07194901","PRJNA389300","SRP108689"]
["Seed 14 dap rep2 (SRR5648376)","SRR5648376","Seed 14 dap rep2 (SRR5648376)","Seed at 14 days after pollination rep2 (SRR5648376)","Seed 14 dap rep2","Seed","14 days after pollination",null,"rep2","S14_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648376","SAMN07194902","SAMN07194902","PRJNA389300","SRP108689"]
["Seed 14 dap rep3 (SRR5648377)","SRR5648377","Seed 14 dap rep3 (SRR5648377)","Seed at 14 days after pollination rep3 (SRR5648377)","Seed 14 dap rep3","Seed","14 days after pollination",null,"rep3","S14_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648377","SAMN07194903","SAMN07194903","PRJNA389300","SRP108689"]
["Seed 18 dap rep1 (SRR5648378)","SRR5648378","Seed 18 dap rep1 (SRR5648378)","Seed at 18 days after pollination rep1 (SRR5648378)","Seed 18 dap rep1","Seed","18 days after pollination",null,"rep1","S18_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648378","SAMN07194904","SAMN07194904","PRJNA389300","SRP108689"]
["Seed 18 dap rep2 (SRR5648379)","SRR5648379","Seed 18 dap rep2 (SRR5648379)","Seed at 18 days after pollination rep2 (SRR5648379)","Seed 18 dap rep2","Seed","18 days after pollination",null,"rep2","S18_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648379","SAMN07194905","SAMN07194905","PRJNA389300","SRP108689"]
["Seed 18 dap rep3 (SRR5648372)","SRR5648372","Seed 18 dap rep3 (SRR5648372)","Seed at 18 days after pollination rep3 (SRR5648372)","Seed 18 dap rep3","Seed","18 days after pollination",null,"rep3","S18_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648372","SAMN07194906","SAMN07194906","PRJNA389300","SRP108689"]
["Stem 5 wk rep1 (SRR5648373)","SRR5648373","Stem 5 wk rep1 (SRR5648373)","Stem at 5-week-old plants rep1 (SRR5648373)","Stem 5 wk rep1","Stem","5-week-old plants",null,"rep1","Stem_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648373","SAMN07194907","SAMN07194907","PRJNA389300","SRP108689"]
["Stem 5 wk rep2 (SRR5648374)","SRR5648374","Stem 5 wk rep2 (SRR5648374)","Stem at 5-week-old plants rep2 (SRR5648374)","Stem 5 wk rep2","Stem","5-week-old plants",null,"rep2","Stem_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648374","SAMN07194908","SAMN07194908","PRJNA389300","SRP108689"]
["Stem 5 wk rep3 (SRR5648375)","SRR5648375","Stem 5 wk rep3 (SRR5648375)","Stem at 5-week-old plants rep3 (SRR5648375)","Stem 5 wk rep3","Stem","5-week-old plants",null,"rep3","Stem_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648375","SAMN07194909","SAMN07194909","PRJNA389300","SRP108689"]
["Mix tissues rep1 (SRR5648397)","SRR5648397","Mix tissues rep1 (SRR5648397)","Mix tissues at 5-week-old plants rep1 (SRR5648397)","Mix tissues rep1","Mix tissues","5-week-old plants",null,"rep1","Mix_MiSeq","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648397","SAMN07194888","SAMN07194888","PRJNA389300","SRP108689"]

{"sheet":"expdesign","index":3,"n_rows":12,"n_cols":4,"rows_kept":12}
["#EXPT DESIGN (This page is not yet fully thought out)"]
[]
["#","#Factors","Total","Factor Names; ':' separated; in order"]
[]
[]
["#","#Factor Levels"]
["#","#Factor Name","Total levels","Factor Level Names; ':' separated; in order"]
[]
[]
[]
["#","Treatments (Factor combinations)"]
["#","Treatment Name","Reps"]

{"sheet":"method","index":4,"n_rows":13,"n_cols":3,"rows_kept":13}
["#METHOD"]
["#","#Name:Title"]
[null,"NAME","TPM values per gene from HTSeq raw read counts on exons"]
["#","#Shortname: For label in website"]
[null,"SHORTNAME","TPM from HTSeq Count"]
["#","#Version if any"]
[null,"VERSION"]
["#","#Description: for LIS website"]
[null,"DESCRIPTION","TPM values calculated from HTSeq read counts mapped to exons only per gene.  "]
["#","#Details:"]
[null,"DETAILS","Reads were mapped to reference genome using GSNAP.  HTSeq counts were generated from read alignments only to exons aggregated over a gene. TPM was calculated from these exonic read counts."]
["#","#Notes: For curation, private"]
[null,"NOTES","**Provide later: GSNAP parameters and ref. HTSeq count parameters and ref. Refine description and details. TPM explain and reference."]

{"sheet":"notes","index":5,"n_rows":68,"n_cols":29,"rows_kept":68}
["Notes about this file (Not used for loading)"]
[]
[]
[]
[null,"From SraRunTable.txt"]
[null,"AvgSpotLen_l","BioSample_s","Experiment_s","Instrument_s","Library_Name_s","MBases_l","MBytes_l","Run_s","SRA_Sample_s","Sample_Name_s","dev_stage_s","replicate_s","tissue_s","Assay_Type_s","BioProject_s","BioSampleModel_s","Consent_s","InsertSize_l","LibraryLayout_s","LibrarySelection_s","LibrarySource_s","LoadDate_s","Organism_s","Platform_s","ReleaseDate_s","SRA_Study_s","cultivar_s","geo_loc_name_s"]
[null,202,"SAMN07194906","SRX2885760","Illumina HiSeq 2500","S18_Rep3",3038,2092,"SRR5648372","SRS2253812","S18_Rep3","18 days after pollination","biological replicate 3","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194907","SRX2885759","Illumina HiSeq 2500","Stem_Rep1",4940,3251,"SRR5648373","SRS2253811","Stem_Rep1","5-week-old plants","biological replicate 1","Stem","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,228,"SAMN07194908","SRX2885758","Illumina HiSeq 2500","Stem_Rep2",3653,2002,"SRR5648374","SRS2253810","Stem_Rep2","5-week-old plants","biological replicate 2","Stem","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,220,"SAMN07194909","SRX2885757","Illumina HiSeq 2500","Stem_Rep3",3256,1925,"SRR5648375","SRS2253809","Stem_Rep3","5-week-old plants","biological replicate 3","Stem","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194902","SRX2885756","Illumina HiSeq 2500","S14_Rep2",3728,2540,"SRR5648376","SRS2253808","S14_Rep2","14 days after pollination","biological replicate 2","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194903","SRX2885755","Illumina HiSeq 2500","S14_Rep3",4829,3322,"SRR5648377","SRS2253807","S14_Rep3","14 days after pollination","biological replicate 3","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194904","SRX2885754","Illumina HiSeq 2500","S18_Rep1",5163,3404,"SRR5648378","SRS2253806","S18_Rep1","18 days after pollination","biological replicate 1","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194905","SRX2885753","Illumina HiSeq 2500","S18_Rep2",3765,2462,"SRR5648379","SRS2253805","S18_Rep2","18 days after pollination","biological replicate 2","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194901","SRX2885752","Illumina HiSeq 2500","S14_Rep1",7677,5010,"SRR5648380","SRS2253804","S14_Rep1","14 days after pollination","biological replicate 1","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194900","SRX2885751","Illumina HiSeq 2500","S10_Rep3",4968,3303,"SRR5648381","SRS2253803","S10_Rep3","10 days after pollination","biological replicate 3","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194892","SRX2885750","Illumina HiSeq 2500","Root_Rep1",7523,4941,"SRR5648382","SRS2253802","Root_Rep1","5-week-old plants","biological replicate 1","Root","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,424,"SAMN07194893","SRX2885748","Illumina HiSeq 2500","Root_Rep2",11272,7123,"SRR5648383","SRS2253800","Root_Rep2","5-week-old plants","biological replicate 2","Root","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194895","SRX2885749","Illumina HiSeq 2500","S8_Rep1",6008,3941,"SRR5648384","SRS2253801","S8_Rep1","8 days after pollination","biological replicate 1","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,211,"SAMN07194894","SRX2885747","Illumina HiSeq 2500","Root_Rep3",5039,3208,"SRR5648385","SRS2253799","Root_Rep3","5-week-old plants","biological replicate 3","Root","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194897","SRX2885746","Illumina HiSeq 2500","S8_Rep3",4304,2940,"SRR5648386","SRS2253798","S8_Rep3","8 days after pollination","biological replicate 3","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194896","SRX2885745","Illumina HiSeq 2500","S8_Rep2",3984,2752,"SRR5648387","SRS2253797","S8_Rep2","8 days after pollination","biological replicate 2","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,202,"SAMN07194899","SRX2885744","Illumina HiSeq 2500","S10_Rep2",4689,3146,"SRR5648388","SRS2253796","S10_Rep2","10 days after pollination","biological replicate 2","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194898","SRX2885743","Illumina HiSeq 2500","S10_Rep1",6950,4566,"SRR5648389","SRS2253795","S10_Rep1","10 days after pollination","biological replicate 1","Seed","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194891","SRX2885742","Illumina HiSeq 2500","P16_Rep1",6865,4513,"SRR5648390","SRS2253794","P16_Rep1","16 days after pollination","biological replicate 1","Pod","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194890","SRX2885741","Illumina HiSeq 2500","P10_Rep1",6075,3981,"SRR5648391","SRS2253793","P10_Rep1","10 days after pollination","biological replicate 1","Pod","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194885","SRX2885740","Illumina HiSeq 2500","Leaf_Rep1",4975,3267,"SRR5648392","SRS2253792","Leaf_Rep1","5-week-old plants","biological replicate 1","leaf","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,225,"SAMN07194884","SRX2885739","Illumina HiSeq 2500","Flower_Rep3",3831,2127,"SRR5648393","SRS2253791","Flower_Rep3","Flowering","biological replicate 3","flower","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,252,"SAMN07194883","SRX2885738","Illumina HiSeq 2500","Flower_Rep2",3686,1503,"SRR5648394","SRS2253789","Flower_Rep2","Flowering","biological replicate 2","flower","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194882","SRX2885737","Illumina HiSeq 2500","Flower_Rep1",5284,3481,"SRR5648395","SRS2253790","Flower_Rep1","Flowering","biological replicate 1","flower","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,200,"SAMN07194889","SRX2885736","Illumina HiSeq 2500","P6_Rep1",7378,4826,"SRR5648396","SRS2253788","P6_Rep1","6 days after pollination","biological replicate 1","Pod","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,407,"SAMN07194888","SRX2885735","Illumina MiSeq","Mix_MiSeq",3863,2460,"SRR5648397","SRS2253787","Mix_MiSeq","5-week-old plants","biological replicate 1","Mix tissues","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,210,"SAMN07194887","SRX2885734","Illumina HiSeq 2500","Leaf_Rep3",5072,3264,"SRR5648398","SRS2253786","Leaf_Rep3","5-week-old plants","biological replicate 3","leaf","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[null,429,"SAMN07194886","SRX2885733","Illumina MiSeq","Leaf_Rep2_MiSeq",2664,1971,"SRR5648399","SRS2253785","Leaf_Rep2_MiSeq","5-week-old plants","biological replicate 2","leaf","RNA-Seq","PRJNA389300","Plant","public",0,"PAIRED","cDNA","TRANSCRIPTOMIC","2017-06-06","Vigna unguiculata","ILLUMINA","2017-06-07","SRP108689","IT97K-499-35","not applicable"]
[]
[]
[]
[]
[null,"CONSTRUCTS:"]
[]
[null,"SRR5648372","S18_Rep3","Seed","18 days after pollination","Seed 18 dap","rep3","Seed 18 dap rep3","Seed 18 dap rep3 (SRR5648372)","Seed at 18 days after pollination rep3 (SRR5648372)"]
[null,"SRR5648373","Stem_Rep1","Stem","5-week-old plants","Stem 5 wk","rep1","Stem 5 wk rep1","Stem 5 wk rep1 (SRR5648373)","Stem at 5-week-old plants rep1 (SRR5648373)"]
[null,"SRR5648374","Stem_Rep2","Stem","5-week-old plants","Stem 5 wk","rep2","Stem 5 wk rep2","Stem 5 wk rep2 (SRR5648374)","Stem at 5-week-old plants rep2 (SRR5648374)"]
[null,"SRR5648375","Stem_Rep3","Stem","5-week-old plants","Stem 5 wk","rep3","Stem 5 wk rep3","Stem 5 wk rep3 (SRR5648375)","Stem at 5-week-old plants rep3 (SRR5648375)"]
[null,"SRR5648376","S14_Rep2","Seed","14 days after pollination","Seed 14 dap","rep2","Seed 14 dap rep2","Seed 14 dap rep2 (SRR5648376)","Seed at 14 days after pollination rep2 (SRR5648376)"]
[null,"SRR5648377","S14_Rep3","Seed","14 days after pollination","Seed 14 dap","rep3","Seed 14 dap rep3","Seed 14 dap rep3 (SRR5648377)","Seed at 14 days after pollination rep3 (SRR5648377)"]
[null,"SRR5648378","S18_Rep1","Seed","18 days after pollination","Seed 18 dap","rep1","Seed 18 dap rep1","Seed 18 dap rep1 (SRR5648378)","Seed at 18 days after pollination rep1 (SRR5648378)"]
[null,"SRR5648379","S18_Rep2","Seed","18 days after pollination","Seed 18 dap","rep2","Seed 18 dap rep2","Seed 18 dap rep2 (SRR5648379)","Seed at 18 days after pollination rep2 (SRR5648379)"]
[null,"SRR5648380","S14_Rep1","Seed","14 days after pollination","Seed 14 dap","rep1","Seed 14 dap rep1","Seed 14 dap rep1 (SRR5648380)","Seed at 14 days after pollination rep1 (SRR5648380)"]
[null,"SRR5648381","S10_Rep3","Seed","10 days after pollination","Seed 10 dap","rep3","Seed 10 dap rep3","Seed 10 dap rep3 (SRR5648381)","Seed at 10 days after pollination rep3 (SRR5648381)"]
[null,"SRR5648382","Root_Rep1","Root","5-week-old plants","Root 5 wk","rep1","Root 5 wk rep1","Root 5 wk rep1 (SRR5648382)","Root at 5-week-old plants rep1 (SRR5648382)"]
[null,"SRR5648383","Root_Rep2","Root","5-week-old plants","Root 5 wk","rep2","Root 5 wk rep2","Root 5 wk rep2 (SRR5648383)","Root at 5-week-old plants rep2 (SRR5648383)"]
[null,"SRR5648384","S8_Rep1","Seed","8 days after pollination","Seed 8 dap","rep1","Seed 8 dap rep1","Seed 8 dap rep1 (SRR5648384)","Seed at 8 days after pollination rep1 (SRR5648384)"]
[null,"SRR5648385","Root_Rep3","Root","5-week-old plants","Root 5 wk","rep3","Root 5 wk rep3","Root 5 wk rep3 (SRR5648385)","Root at 5-week-old plants rep3 (SRR5648385)"]
[null,"SRR5648386","S8_Rep3","Seed","8 days after pollination","Seed 8 dap","rep3","Seed 8 dap rep3","Seed 8 dap rep3 (SRR5648386)","Seed at 8 days after pollination rep3 (SRR5648386)"]
[null,"SRR5648387","S8_Rep2","Seed","8 days after pollination","Seed 8 dap","rep2","Seed 8 dap rep2","Seed 8 dap rep2 (SRR5648387)","Seed at 8 days after pollination rep2 (SRR5648387)"]
[null,"SRR5648388","S10_Rep2","Seed","10 days after pollination","Seed 10 dap","rep2","Seed 10 dap rep2","Seed 10 dap rep2 (SRR5648388)","Seed at 10 days after pollination rep2 (SRR5648388)"]
[null,"SRR5648389","S10_Rep1","Seed","10 days after pollination","Seed 10 dap","rep1","Seed 10 dap rep1","Seed 10 dap rep1 (SRR5648389)","Seed at 10 days after pollination rep1 (SRR5648389)"]
[null,"SRR5648390","P16_Rep1","Pod","16 days after pollination","Pod 16 dap","rep1","Pod 16 dap rep1","Pod 16 dap rep1 (SRR5648390)","Pod at 16 days after pollination rep1 (SRR5648390)"]
[null,"SRR5648391","P10_Rep1","Pod","10 days after pollination","Pod 10 dap","rep1","Pod 10 dap rep1","Pod 10 dap rep1 (SRR5648391)","Pod at 10 days after pollination rep1 (SRR5648391)"]
[null,"SRR5648392","Leaf_Rep1","leaf","5-week-old plants","leaf 5 wk","rep1","leaf 5 wk rep1","leaf 5 wk rep1 (SRR5648392)","leaf at 5-week-old plants rep1 (SRR5648392)"]
[null,"SRR5648393","Flower_Rep3","flower","Flowering","flower","rep3","flower rep3","flower rep3 (SRR5648393)","flower at Flowering rep3 (SRR5648393)"]
[null,"SRR5648394","Flower_Rep2","flower","Flowering","flower","rep2","flower rep2","flower rep2 (SRR5648394)","flower at Flowering rep2 (SRR5648394)"]
[null,"SRR5648395","Flower_Rep1","flower","Flowering","flower","rep1","flower rep1","flower rep1 (SRR5648395)","flower at Flowering rep1 (SRR5648395)"]
[null,"SRR5648396","P6_Rep1","Pod","6 days after pollination","Pod 6 dap","rep1","Pod 6 dap rep1","Pod 6 dap rep1 (SRR5648396)","Pod at 6 days after pollination rep1 (SRR5648396)"]
[null,"SRR5648397","Mix_MiSeq","Mix tissues","5-week-old plants","Mix tissues","rep1","Mix tissues rep1","Mix tissues rep1 (SRR5648397)","Mix tissues at 5-week-old plants rep1 (SRR5648397)"]
[null,"SRR5648398","Leaf_Rep3","leaf","5-week-old plants","leaf 5 wk","rep3","leaf 5 wk rep3","leaf 5 wk rep3 (SRR5648398)","leaf at 5-week-old plants rep3 (SRR5648398)"]
[null,"SRR5648399","Leaf_Rep2_MiSeq","leaf","5-week-old plants","leaf 5 wk","rep2","leaf 5 wk rep2","leaf 5 wk rep2 (SRR5648399)","leaf at 5-week-old plants rep2 (SRR5648399)"]

{"sheet":"sample_orig_unordered","index":6,"n_rows":33,"n_cols":19,"rows_kept":33}
["#SAMPLE"]
["#","**The replicates are not ordered in this original sequence of run numbers (SRR) and hence will be confusing. Needs a rational ordering."]
["#Hints:"]
["#sample display name","Lookup key for data column (=SRR no)","unique name for LIS Chado","Descriptive","Exp design: factors-rep combinations","tissue/organ/plant part",{"$nulls":4},"Chado spelling","sub-spp, cv-type","strain, line, cultivar, genotype","Other_attributes, place-holder, add extra columns","SRR(not in recc)","SAMN number","SRS number","PRJN number","SRP number"]
["sample_name","key","sample_uniquename","description","treatment","tissue","dev_stage","age","rep","library_name","organism","infraspecies","cultivar","other","sra_run","biosample_accession","sra_accession","bioproject_accession","sra_study"]
["Seed 18 dap rep3 (SRR5648372)","SRR5648372","Seed 18 dap rep3 (SRR5648372)","Seed at 18 days after pollination rep3 (SRR5648372)","Seed 18 dap rep3","Seed","18 days after pollination",null,"rep3","S18_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648372","SAMN07194906","SAMN07194906","PRJNA389300","SRP108689"]
["Stem 5 wk rep1 (SRR5648373)","SRR5648373","Stem 5 wk rep1 (SRR5648373)","Stem at 5-week-old plants rep1 (SRR5648373)","Stem 5 wk rep1","Stem","5-week-old plants",null,"rep1","Stem_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648373","SAMN07194907","SAMN07194907","PRJNA389300","SRP108689"]
["Stem 5 wk rep2 (SRR5648374)","SRR5648374","Stem 5 wk rep2 (SRR5648374)","Stem at 5-week-old plants rep2 (SRR5648374)","Stem 5 wk rep2","Stem","5-week-old plants",null,"rep2","Stem_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648374","SAMN07194908","SAMN07194908","PRJNA389300","SRP108689"]
["Stem 5 wk rep3 (SRR5648375)","SRR5648375","Stem 5 wk rep3 (SRR5648375)","Stem at 5-week-old plants rep3 (SRR5648375)","Stem 5 wk rep3","Stem","5-week-old plants",null,"rep3","Stem_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648375","SAMN07194909","SAMN07194909","PRJNA389300","SRP108689"]
["Seed 14 dap rep2 (SRR5648376)","SRR5648376","Seed 14 dap rep2 (SRR5648376)","Seed at 14 days after pollination rep2 (SRR5648376)","Seed 14 dap rep2","Seed","14 days after pollination",null,"rep2","S14_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648376","SAMN07194902","SAMN07194902","PRJNA389300","SRP108689"]
["Seed 14 dap rep3 (SRR5648377)","SRR5648377","Seed 14 dap rep3 (SRR5648377)","Seed at 14 days after pollination rep3 (SRR5648377)","Seed 14 dap rep3","Seed","14 days after pollination",null,"rep3","S14_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648377","SAMN07194903","SAMN07194903","PRJNA389300","SRP108689"]
["Seed 18 dap rep1 (SRR5648378)","SRR5648378","Seed 18 dap rep1 (SRR5648378)","Seed at 18 days after pollination rep1 (SRR5648378)","Seed 18 dap rep1","Seed","18 days after pollination",null,"rep1","S18_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648378","SAMN07194904","SAMN07194904","PRJNA389300","SRP108689"]
["Seed 18 dap rep2 (SRR5648379)","SRR5648379","Seed 18 dap rep2 (SRR5648379)","Seed at 18 days after pollination rep2 (SRR5648379)","Seed 18 dap rep2","Seed","18 days after pollination",null,"rep2","S18_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648379","SAMN07194905","SAMN07194905","PRJNA389300","SRP108689"]
["Seed 14 dap rep1 (SRR5648380)","SRR5648380","Seed 14 dap rep1 (SRR5648380)","Seed at 14 days after pollination rep1 (SRR5648380)","Seed 14 dap rep1","Seed","14 days after pollination",null,"rep1","S14_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648380","SAMN07194901","SAMN07194901","PRJNA389300","SRP108689"]
["Seed 10 dap rep3 (SRR5648381)","SRR5648381","Seed 10 dap rep3 (SRR5648381)","Seed at 10 days after pollination rep3 (SRR5648381)","Seed 10 dap rep3","Seed","10 days after pollination",null,"rep3","S10_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648381","SAMN07194900","SAMN07194900","PRJNA389300","SRP108689"]
["Root 5 wk rep1 (SRR5648382)","SRR5648382","Root 5 wk rep1 (SRR5648382)","Root at 5-week-old plants rep1 (SRR5648382)","Root 5 wk rep1","Root","5-week-old plants",null,"rep1","Root_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648382","SAMN07194892","SAMN07194892","PRJNA389300","SRP108689"]
["Root 5 wk rep2 (SRR5648383)","SRR5648383","Root 5 wk rep2 (SRR5648383)","Root at 5-week-old plants rep2 (SRR5648383)","Root 5 wk rep2","Root","5-week-old plants",null,"rep2","Root_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648383","SAMN07194893","SAMN07194893","PRJNA389300","SRP108689"]
["Seed 8 dap rep1 (SRR5648384)","SRR5648384","Seed 8 dap rep1 (SRR5648384)","Seed at 8 days after pollination rep1 (SRR5648384)","Seed 8 dap rep1","Seed","8 days after pollination",null,"rep1","S8_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648384","SAMN07194895","SAMN07194895","PRJNA389300","SRP108689"]
["Root 5 wk rep3 (SRR5648385)","SRR5648385","Root 5 wk rep3 (SRR5648385)","Root at 5-week-old plants rep3 (SRR5648385)","Root 5 wk rep3","Root","5-week-old plants",null,"rep3","Root_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648385","SAMN07194894","SAMN07194894","PRJNA389300","SRP108689"]
["Seed 8 dap rep3 (SRR5648386)","SRR5648386","Seed 8 dap rep3 (SRR5648386)","Seed at 8 days after pollination rep3 (SRR5648386)","Seed 8 dap rep3","Seed","8 days after pollination",null,"rep3","S8_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648386","SAMN07194897","SAMN07194897","PRJNA389300","SRP108689"]
["Seed 8 dap rep2 (SRR5648387)","SRR5648387","Seed 8 dap rep2 (SRR5648387)","Seed at 8 days after pollination rep2 (SRR5648387)","Seed 8 dap rep2","Seed","8 days after pollination",null,"rep2","S8_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648387","SAMN07194896","SAMN07194896","PRJNA389300","SRP108689"]
["Seed 10 dap rep2 (SRR5648388)","SRR5648388","Seed 10 dap rep2 (SRR5648388)","Seed at 10 days after pollination rep2 (SRR5648388)","Seed 10 dap rep2","Seed","10 days after pollination",null,"rep2","S10_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648388","SAMN07194899","SAMN07194899","PRJNA389300","SRP108689"]
["Seed 10 dap rep1 (SRR5648389)","SRR5648389","Seed 10 dap rep1 (SRR5648389)","Seed at 10 days after pollination rep1 (SRR5648389)","Seed 10 dap rep1","Seed","10 days after pollination",null,"rep1","S10_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648389","SAMN07194898","SAMN07194898","PRJNA389300","SRP108689"]
["Pod 16 dap rep1 (SRR5648390)","SRR5648390","Pod 16 dap rep1 (SRR5648390)","Pod at 16 days after pollination rep1 (SRR5648390)","Pod 16 dap rep1","Pod","16 days after pollination",null,"rep1","P16_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648390","SAMN07194891","SAMN07194891","PRJNA389300","SRP108689"]
["Pod 10 dap rep1 (SRR5648391)","SRR5648391","Pod 10 dap rep1 (SRR5648391)","Pod at 10 days after pollination rep1 (SRR5648391)","Pod 10 dap rep1","Pod","10 days after pollination",null,"rep1","P10_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648391","SAMN07194890","SAMN07194890","PRJNA389300","SRP108689"]
["leaf 5 wk rep1 (SRR5648392)","SRR5648392","leaf 5 wk rep1 (SRR5648392)","leaf at 5-week-old plants rep1 (SRR5648392)","leaf 5 wk rep1","leaf","5-week-old plants",null,"rep1","Leaf_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648392","SAMN07194885","SAMN07194885","PRJNA389300","SRP108689"]
["flower rep3 (SRR5648393)","SRR5648393","flower rep3 (SRR5648393)","flower at Flowering rep3 (SRR5648393)","flower rep3","flower","Flowering",null,"rep3","Flower_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648393","SAMN07194884","SAMN07194884","PRJNA389300","SRP108689"]
["flower rep2 (SRR5648394)","SRR5648394","flower rep2 (SRR5648394)","flower at Flowering rep2 (SRR5648394)","flower rep2","flower","Flowering",null,"rep2","Flower_Rep2","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648394","SAMN07194883","SAMN07194883","PRJNA389300","SRP108689"]
["flower rep1 (SRR5648395)","SRR5648395","flower rep1 (SRR5648395)","flower at Flowering rep1 (SRR5648395)","flower rep1","flower","Flowering",null,"rep1","Flower_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648395","SAMN07194882","SAMN07194882","PRJNA389300","SRP108689"]
["Pod 6 dap rep1 (SRR5648396)","SRR5648396","Pod 6 dap rep1 (SRR5648396)","Pod at 6 days after pollination rep1 (SRR5648396)","Pod 6 dap rep1","Pod","6 days after pollination",null,"rep1","P6_Rep1","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648396","SAMN07194889","SAMN07194889","PRJNA389300","SRP108689"]
["Mix tissues rep1 (SRR5648397)","SRR5648397","Mix tissues rep1 (SRR5648397)","Mix tissues at 5-week-old plants rep1 (SRR5648397)","Mix tissues rep1","Mix tissues","5-week-old plants",null,"rep1","Mix_MiSeq","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648397","SAMN07194888","SAMN07194888","PRJNA389300","SRP108689"]
["leaf 5 wk rep3 (SRR5648398)","SRR5648398","leaf 5 wk rep3 (SRR5648398)","leaf at 5-week-old plants rep3 (SRR5648398)","leaf 5 wk rep3","leaf","5-week-old plants",null,"rep3","Leaf_Rep3","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648398","SAMN07194887","SAMN07194887","PRJNA389300","SRP108689"]
["leaf 5 wk rep2 (SRR5648399)","SRR5648399","leaf 5 wk rep2 (SRR5648399)","leaf at 5-week-old plants rep2 (SRR5648399)","leaf 5 wk rep2","leaf","5-week-old plants",null,"rep2","Leaf_Rep2_MiSeq","Vigna unguiculata","IT97K-499-35","IT97K-499-35",null,"SRR5648399","SAMN07194886","SAMN07194886","PRJNA389300","SRP108689"]