--- file_transformation: - none changes: - 2018-03-21 Initial repository creation - 2018-03-24 Remove five small families that had complete attrition at alignment cleaning due to poor alignments: L_ZG7XJG L_ZN318S L_ZQ0R57 L_ZQ6V3Z L_ZRCCM5 L_ZTLHG9 - 2018-04-12 Add file legume.genefam.fam1.M65K.median_abs_dev.tsv.gz - 2018-04-17 Correct two keywords in README - 2018-06-07 Correct gene trees (calculate branch lengths with FastTree) for 16 large files for which branch lengths had been missing. This affected legume.genefam.fam1.M65K.trees_ML_rooted.tar.gz - 2022-06-10 adf: add "full yuck" identifiers both for families (ie legfed_v1_0 prefixes) and family members; fixes https://github.com/legumeinfo/datastore-issues/issues/104 - 2024-01-27 sbc: Rename collection and files to match general Data Store pattern: strain.type.KEY/gensp.strain.type.KEY.filetype.suf In particular, from legume.genefam.fam1.M65K/ to mixed.fam1.M65K/ and from legume.genefam.fam1.M65K. to legume.mixed.fam1.M65K. - 2024-04-16 sbc: Rename collection and files again, corresponding with new collection name. Renaming pattern: 's/legume.mixed.fam1/legume.fam1/'