##### PUB RECORD #####
## 10.1038/ncomms5340  25004933  Qi, Li et al., 2014  "Qi X, Li MW, Xie M, Liu X, Ni M, Shao G, Song C, Kay-Yuen Yim A, Tao Y, Wong FL, Isobe S, Wong CF, Wong KS, Xu C, Li C, Wang Y, Guan R, Sun F, Fan G, Xiao Z, Zhou F, Phang TH, Liu X, Tong SW, Chan TF, Yiu SM, Tabata S, Wang J, Xu X, Lam HM. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340. PMID: 25004933; PMCID: PMC4104456." ##

PMID- 25004933
OWN - NLM
STAT- MEDLINE
DCOM- 20151116
LR  - 20231213
IS  - 2041-1723 (Electronic)
IS  - 2041-1723 (Linking)
VI  - 5
DP  - 2014 Jul 9
TI  - Identification of a novel salt tolerance gene in wild soybean by whole-genome 
      sequencing.
PG  - 4340
LID - 10.1038/ncomms5340 [doi]
LID - 4340
AB  - Using a whole-genome-sequencing approach to explore germplasm resources can serve 
      as an important strategy for crop improvement, especially in investigating wild 
      accessions that may contain useful genetic resources that have been lost during 
      the domestication process. Here we sequence and assemble a draft genome of wild 
      soybean and construct a recombinant inbred population for 
      genotyping-by-sequencing and phenotypic analyses to identify multiple QTLs 
      relevant to traits of interest in agriculture. We use a combination of de novo 
      sequencing data from this work and our previous germplasm re-sequencing data to 
      identify a novel ion transporter gene, GmCHX1, and relate its sequence 
      alterations to salt tolerance. Rapid gain-of-function tests show the protective 
      effects of GmCHX1 towards salt stress. This combination of whole-genome de novo 
      sequencing, high-density-marker QTL mapping by re-sequencing and functional 
      analyses can serve as an effective strategy to unveil novel genomic information 
      in wild soybean to facilitate crop improvement.
FAU - Qi, Xinpeng
AU  - Qi X
AD  - 1] School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong [2].
FAU - Li, Man-Wah
AU  - Li MW
AD  - 1] School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong [2].
FAU - Xie, Min
AU  - Xie M
AD  - 1] BGI-Shenzhen, Shenzhen 518083, PR China [2].
FAU - Liu, Xin
AU  - Liu X
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Ni, Meng
AU  - Ni M
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Shao, Guihua
AU  - Shao G
AD  - Institute of Crop Sciences, The Chinese Academy of Agricultural Sciences, Beijing 
      100081, PR China.
FAU - Song, Chi
AU  - Song C
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Kay-Yuen Yim, Aldrin
AU  - Kay-Yuen Yim A
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Tao, Ye
AU  - Tao Y
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Wong, Fuk-Ling
AU  - Wong FL
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Isobe, Sachiko
AU  - Isobe S
AD  - Kazusa DNA Research Institute, Chiba 292-0818, Japan.
FAU - Wong, Chi-Fai
AU  - Wong CF
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Wong, Kwong-Sen
AU  - Wong KS
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Xu, Chunyan
AU  - Xu C
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Li, Chunqing
AU  - Li C
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Wang, Ying
AU  - Wang Y
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Guan, Rui
AU  - Guan R
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Sun, Fengming
AU  - Sun F
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Fan, Guangyi
AU  - Fan G
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Xiao, Zhixia
AU  - Xiao Z
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Zhou, Feng
AU  - Zhou F
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Phang, Tsui-Hung
AU  - Phang TH
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Liu, Xuan
AU  - Liu X
AD  - Department of Computer Science, The University of Hong Kong, Pokfulam HKSAR, Hong 
      Kong.
FAU - Tong, Suk-Wah
AU  - Tong SW
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Chan, Ting-Fung
AU  - Chan TF
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
FAU - Yiu, Siu-Ming
AU  - Yiu SM
AD  - Department of Computer Science, The University of Hong Kong, Pokfulam HKSAR, Hong 
      Kong.
FAU - Tabata, Satoshi
AU  - Tabata S
AD  - Kazusa DNA Research Institute, Chiba 292-0818, Japan.
FAU - Wang, Jian
AU  - Wang J
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Xu, Xun
AU  - Xu X
AD  - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Lam, Hon-Ming
AU  - Lam HM
AD  - School of Life Sciences and Center for Soybean Research of the State Key 
      Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin 
      HKSAR, Hong Kong.
LA  - eng
SI  - GENBANK/AZNC00000000
SI  - GENBANK/KF879911
SI  - GENBANK/KF879912
SI  - SRA/SRR1185321
SI  - SRA/SRR1185322
SI  - SRA/SRR1185323
SI  - SRA/SRR1185926
SI  - SRA/SRR1185927
SI  - SRA/SRR1185928
SI  - SRA/SRR1185929
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20140709
PL  - England
TA  - Nat Commun
JT  - Nature communications
JID - 101528555
RN  - 0 (Ion Pumps)
RN  - 0 (Plant Proteins)
RN  - 451W47IQ8X (Sodium Chloride)
SB  - IM
MH  - Chromosome Mapping
MH  - *Genome, Plant
MH  - Genotype
MH  - Ion Pumps/*genetics/metabolism
MH  - Molecular Sequence Data
MH  - Plant Proteins/*genetics
MH  - Quantitative Trait Loci
MH  - *Salt Tolerance
MH  - Sodium Chloride/metabolism
MH  - Glycine max/*genetics/physiology
PMC - PMC4104456
EDAT- 2014/07/10 06:00
MHDA- 2015/11/17 06:00
PMCR- 2014/07/21
CRDT- 2014/07/10 06:00
PHST- 2014/03/01 00:00 [received]
PHST- 2014/06/09 00:00 [accepted]
PHST- 2014/07/10 06:00 [entrez]
PHST- 2014/07/10 06:00 [pubmed]
PHST- 2015/11/17 06:00 [medline]
PHST- 2014/07/21 00:00 [pmc-release]
AID - ncomms5340 [pii]
AID - 10.1038/ncomms5340 [doi]
PST - epublish
SO  - Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340.


##### PUB RECORD #####
## 10.1111/pbi.13536  33368860  Jin, Sun et al., 2021  "Jin T, Sun Y, Shan Z, He J, Wang N, Gai J, Li Y. Natural variation in the promoter of GsERD15B affects salt tolerance in soybean. Plant Biotechnol J. 2021 Jun;19(6):1155-1169. doi: 10.1111/pbi.13536. Epub 2021 Jan 19. PMID: 33368860; PMCID: PMC8196659." ##

PMID- 33368860
OWN - NLM
STAT- MEDLINE
DCOM- 20210628
LR  - 20231213
IS  - 1467-7652 (Electronic)
IS  - 1467-7644 (Print)
IS  - 1467-7644 (Linking)
VI  - 19
IP  - 6
DP  - 2021 Jun
TI  - Natural variation in the promoter of GsERD15B affects salt tolerance in soybean.
PG  - 1155-1169
LID - 10.1111/pbi.13536 [doi]
AB  - Salt stress has detrimental effects on crop growth and yield, and the area of 
      salt-affected land is increasing. Soybean is a major source of vegetable protein, 
      oil and feed, but considered as a salt-sensitive crop. Cultivated soybean 
      (Glycine max) is domesticated from wild soybean (G. soja) but lost considerable 
      amount of genetic diversity during the artificial selection. Therefore, it is 
      important to exploit the gene pool of wild soybean. In this study, we identified 
      34 salt-tolerant accessions from wild soybean germplasm and found that a 7-bp 
      insertion/deletion (InDel) in the promoter of GsERD15B (early responsive to 
      dehydration 15B) significantly affects the salt tolerance of soybean. GsERD15B 
      encodes a protein with transcriptional activation function and contains a PAM2 
      domain to mediate its interaction with poly(A)-binding (PAB) proteins. The 7-bp 
      deletion in GsERD15B promoter enhanced the salt tolerance of soybean, with 
      increased up-regulation of GsERD15B, two GmPAB genes, the known stress-related 
      genes including GmABI1, GmABI2, GmbZIP1, GmP5CS, GmCAT4, GmPIP1:6, GmMYB84 and 
      GmSOS1 in response to salt stress. We propose that natural variation in GsERD15B 
      promoter affects soybean salt tolerance, and overexpression of GsERD15B enhanced 
      salt tolerance probably by increasing the expression levels of genes related to 
      ABA-signalling, proline content, catalase peroxidase, dehydration response and 
      cation transport.
CI  - (c) 2020 The Authors. Plant Biotechnology Journal published by Society for 
      Experimental Biology and The Association of Applied Biologists and John Wiley & 
      Sons Ltd.
FAU - Jin, Ting
AU  - Jin T
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - Sun, Yangyang
AU  - Sun Y
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - Shan, Zhong
AU  - Shan Z
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - He, Jianbo
AU  - He J
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - Wang, Ning
AU  - Wang N
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - Gai, Junyi
AU  - Gai J
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
FAU - Li, Yan
AU  - Li Y
AUID- ORCID: 0000-0002-1627-7763
AD  - National Key Laboratory of Crop Genetics and Germplasm Enhancement, National 
      Center for Soybean Improvement, Key Laboratory for Biology and Genetic 
      Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative 
      Innovation Center for Modern Crop Production, Nanjing Agricultural University, 
      Nanjing, China.
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20210119
PL  - England
TA  - Plant Biotechnol J
JT  - Plant biotechnology journal
JID - 101201889
SB  - IM
MH  - *Fabaceae
MH  - Gene Expression Regulation, Plant/genetics
MH  - Plants, Genetically Modified/genetics
MH  - Promoter Regions, Genetic/genetics
MH  - Salt Tolerance/genetics
MH  - *Glycine max/genetics
PMC - PMC8196659
OTO - NOTNLM
OT  - GsERD15B
OT  - GWAS
OT  - InDel
OT  - haplotype
OT  - salt stress
OT  - soybean
COIS- The authors have patents pending related to this work.
EDAT- 2020/12/29 06:00
MHDA- 2021/06/29 06:00
PMCR- 2021/01/19
CRDT- 2020/12/28 12:36
PHST- 2020/12/11 00:00 [revised]
PHST- 2019/10/09 00:00 [received]
PHST- 2020/12/16 00:00 [accepted]
PHST- 2020/12/29 06:00 [pubmed]
PHST- 2021/06/29 06:00 [medline]
PHST- 2020/12/28 12:36 [entrez]
PHST- 2021/01/19 00:00 [pmc-release]
AID - PBI13536 [pii]
AID - 10.1111/pbi.13536 [doi]
PST - ppublish
SO  - Plant Biotechnol J. 2021 Jun;19(6):1155-1169. doi: 10.1111/pbi.13536. Epub 2021 
      Jan 19.