---
- name: glyma.Wm82.gnm1.div.Song_Hyten_2015.Flapjack.txt.gz
  description: Text file containing genotype information of each soybean accession. Columns are ssIDs and rows are Accessions. To be used with soysnp50K_wm82.a1_markerMap.txt as input into the Flapjack Program
  prior_names:
    - glyma.Wm82.gnm1.BDYN.Flapjack.txt.gz
    - soysnp50K_wm82.a1_070617_Flapjack.txt.gz
- name: glyma.Wm82.gnm1.div.Song_Hyten_2015.hmp.txt.gz
  description: HapMap file of the whole U.S. germplasm collection genotyped with SoySNP50K against Williams82 Reference genome a1 (Wm82.a1.v1.1)
  prior_names:
    - glyma.Wm82.gnm1.BDYN.hmp.txt.gz
    - soysnp50K_wm82.a1_41417.hmp.txt.gz
- name: glyma.Wm82.gnm1.div.Song_Hyten_2015.maf.txt.gz
  description: Text file with allele frequencies for the U.S. germplasm collection genotyped with SoySNP50K
  prior_names:
    - glyma.Wm82.gnm1.BDYN.maf.txt.gz
    - soysnp50K_wm82.maf.txt.gz
- name: glyma.Wm82.gnm1.div.Song_Hyten_2015.markerMap.txt.gz
  description: Text file containing ssIDs and their positions in Wm82.a1.v1 reference genome. To be used with soysnp50K_wm82.a1_070617_Flapjack.txt.gz as input into the Flapjack Program
  prior_names:
    - glyma.Wm82.gnm1.BDYN.markerMap.txt.gz
    - soysnp50K_wm82.a1_markerMap.txt.gz
- name: glyma.Wm82.gnm1.div.Song_Hyten_2015.vcf.gz
  description: VCF file of the whole U.S. germplasm collection genotyped with SoySNP50K against Williams82 Reference genome a1 (Wm82.a1.v1.1)
  applications:
    - jbrowse
  prior_names:
    - glyma.Wm82.gnm1.BDYN.vcf.gz
    - soysnp50k_wm82.a1_41317.vcf.gz