identifier: ICPL87119.gnm2.ann1.expr.ICPL87119.Pazhamala_Purohit_2017

provenance: "The files in this directory derive from supplementary data from Pazhamala et al., Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany. The files here are held as part of the SoyBase, LegumeInfo, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the SoyBase, LegumeInfo, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."

synopsis: "Cajanus cajan accession ICPL87119 gene expression atlas"

scientific_name: Cajanus cajan

taxid: 3821

scientific_name_abbrev: cajca

genotype: 
    - ICPL87119

expression_unit: TPM

description: "A gene expression atlas of Cajanus cajan has been developed in this study using 30 samples from Asha genotype (ICPL 87119), representing different developmental stages from germination to senescence. This dataset at LIS uses reads mapped to the ICPL87119 pigeonpea reference genome ICPL87119.gnm1.ann1."

original_file_creation_date: "2020-03-01"

local_file_creation_date: "2025-08-26"

dataset_release_date: "2016-11-23"

publication_doi: 10.1093/jxb/erx010

publication_title: "Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation."

bioproject: PRJNA354681

data_curators: Andrew Farmer, Evan Lavelle

public_access_level: public

license: open

keywords: pigeonpea, atlas, expression, pollen, fertility, seed

citation: "Pazhamala, L. T., Purohit, S., Saxena, R. K., Garg, V., Krishnamurthy, L., Verdier, J., & Varshney, R. K. (2017). Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68(8), 2037–2054."

contributors: "Lekha T. Pazhamala, Shilp Purohit, Rachit K. Saxena, Vanika Garg, L. Krishnamurthy, Jerome Verdier, Rajeev K. Varshney"