{"text_format":"5","workbook":"xlsx","n_sheets":6,"sheets":["dataset","datasource","sample","expdesign","method","notes"],"props":{"creator":"Sudhansu Dash","last_modified_by":"Sudhansu Dash","company":"NCGR"},"read":"whole","wrapped":"gz","date_system":"1904"}

{"sheet":"dataset","index":0,"n_rows":32,"n_cols":3,"rows_kept":32}
["#","#DATASET"]
["#","#SECTION: For DataStore and LIS database"]
["#","#"]
["#","#accession_no"]
[null,"ACCESSION_NO","cajca1"]
["#","#Name:Title"]
[null,"NAME","Pigeonpea gene expression atlas from germination to senescence in genotype Asha(ICPL87119)"]
["#","#Shortname: For label in website"]
[null,"SHORTNAME","Pigeonpea expression atlas"]
["#","#As in DataStore Expected to be the same in LIS Chado)"]
[null,"GENOME","cajca.ICPL87119.gnm1.ann1"]
["#","#Description for LIS"]
[null,"DESCRIPTION"," A gene expression atlas of Cajanus cajan has been developed in this study using 30 samples from Asha genotype (ICPL 87119), representing different developmental stages from germination to senescence. This dataset at LIS uses reads mapped to the ICPL87119 pigeonpea reference genome ICPL87119.gnm1.ann1."]
["#","#Date data analysed"]
[null,"ANALYSIS_DATE","2017 NOV"]
["#","#????Only after loading OR should be in database auto-updated. **Think and change"]
[null,"LOAD_DATE"]
["#","#"]
["#"]
["#"]
["#","#SECTION: For G/Jbrowse"]
["#","#"]
["#","#Browser dir name:  **Is DATASET_SHORTNAME in scripts"]
[null,"BROW_DIRNAME"]
["#","#"]
["#","#Browser dataset name: May use SHORTNAME.  **Is DATASET_LONGNAME in scripts"]
["#","#Browser genome version: Is  GENOME_VERSION in scripts"]
[null,"BROW_GENOME_VER","Cc1.0"]
["#","#Browser LG_ABBREVIATION: Pseudomolecule abbreviation in GBrowse. Ex: Pv or Ca or Cc, etc."]
[null," LG_ABBREVIATION"]
["#","#Local working dir: Location of data and file processing"]
[null,"LOCAL_WORKING_DIR","cajca1-SRP097728"]

{"sheet":"datasource","index":1,"n_rows":26,"n_cols":3,"rows_kept":26}
["#","#DATASOURCE"]
["#","#"]
["#","#Name, descriptive (max 250 char)"]
[null,"NAME","Gene expression atlas of pigeonpea Asha(ICPL87119)"]
["#","#Shortname: max 64 char"]
[null,"SHORTNAME","Pigeonpea gene expression atlas"]
["#","#Origin: ex. SRA, GEO, A labname, etc."]
[null,"ORIGIN","SRA"]
["# ","#Description: our description if needed"]
[null,"DESCRIPTION","To be able to link the genome sequence information to the phenotype, especially those related to developmental processes, a gene expression atlas of Cajanus cajan (CcGEA) have been developed. In this study,  30 samples from Asha genotype (ICPL 87119) have been used, representing different developmental stages from germination to senescence. It provides a valuable resource for pigeonpea to identify candidate genes involved in specific developmental processes and to understand the well-orchestrated growth and developmental process in this resilient crop. Platform: Illumina HiSeq 2500."]
["#","#NCBI BioProj acc, PRJNA num"]
[null,"BIOPROJ_ACC","PRJNA354681"]
["#","#NCBI BioProj Title"]
[null,"BIOPROJ_TITLE","Gene expression atlas of pigeonpea"]
["#","#NCBI BioProj description/ abstract(?)"]
[null,"BIOPROJ_DESCRIPTION","Pigeonpea (Cajanus cajan) is an important grain legume of the semi-arid tropics, mainly used for its protein rich seeds. To be able to link the genome sequence information to the phenotype, especially those related to developmental processes, a gene expression atlas of Cajanus cajan (CcGEA) have been developed. In this study, we have used 30 samples from Asha genotype (ICPL 87119), representing different developmental stages from germination to senescence. CcGEA provides a valuable resource for pigeonpea to identify candidate genes involved in specific developmental processes and to understand the well-orchestrated growth and developmental process in this resilient crop. Platform: Illumina HiSeq 2500."]
["#","#NCBI SRP number"]
[null,"SRA_PROJ_ACC","SRP097728"]
["#","# GEO series if exists"]
[null,"GEO_SERIES"]
["#","#Associated publication at NCBI"]
[null,"BIOPROJ_PUBLICATION","Pazhamala, L. T., Purohit, S., Saxena, R. K., Garg, V., Krishnamurthy, L., Verdier, J., & Varshney, R. K. (2017). Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany, 68(8), 2037–2054. http://doi.org/10.1093/jxb/erx010"]
["#","#Link to Pub"]
[null,"PUB_LINK","https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5429002/"]
["#","#Link to full publication"]
[null,"PUB_FULLLINK","https://academic.oup.com/jxb/article/68/8/2037/3051749/Gene-expression-atlas-of-pigeonpea-and-its"]

{"sheet":"sample","index":2,"n_rows":35,"n_cols":17,"rows_kept":35}
["#SAMPLE"]
["#"]
["#Hints:"]
["#sample display name","Lookup key for data column (=SRR no)","unique name for LIS Chado","Descriptive","Exp design: factors-rep combinations","tissue/organ/plant part",null,null,"Chado spelling","sub-spp, cv-type","strain, line, cultivar, genotype","Other_attributes, place-holder, add extra columns","SRR(not in recc)","SAMN number","SRS number","PRJN number","SRP number"]
["sample_name","key","sample_uniquename","description","treatment","tissue","dev_stage","age","organism","infraspecies","cultivar","other","sra_run","biosample_accession","sra_accession","bioproject_accession","sra_study"]
["Mature seed at reprod (SRR5199304)","SRR5199304","Mature seed at reprod (SRR5199304)","Mature seed at Reproductive stage (SRR5199304)","Mature seed at reprod","Mature seed","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199304","SAMN06264156","SRS1937936","PRJNA354681","SRP097728"]
["Immature seed at reprod (SRR5199305)","SRR5199305","Immature seed at reprod (SRR5199305)","Immature seed at Reproductive stage (SRR5199305)","Immature seed at reprod","Immature seed","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199305","SAMN06264155","SRS1937937","PRJNA354681","SRP097728"]
["Mature pod at reprod (SRR5199306)","SRR5199306","Mature pod at reprod (SRR5199306)","Mature pod at Reproductive stage (SRR5199306)","Mature pod at reprod","Mature pod","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199306","SAMN06264154","SRS1937938","PRJNA354681","SRP097728"]
["Shoot apical meristem at reprod (SRR5199307)","SRR5199307","Shoot apical meristem at reprod (SRR5199307)","Shoot apical meristem at Reproductive stage (SRR5199307)","Shoot apical meristem at reprod","Shoot apical meristem","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199307","SAMN06264153","SRS1937939","PRJNA354681","SRP097728"]
["Sepal at reprod (SRR5199308)","SRR5199308","Sepal at reprod (SRR5199308)","Sepal at Reproductive stage (SRR5199308)","Sepal at reprod","Sepal","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199308","SAMN06264152","SRS1937940","PRJNA354681","SRP097728"]
["Petal at reprod (SRR5199309)","SRR5199309","Petal at reprod (SRR5199309)","Petal at Reproductive stage (SRR5199309)","Petal at reprod","Petal","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199309","SAMN06264151","SRS1937941","PRJNA354681","SRP097728"]
["Root at senesc (SRR5199310)","SRR5199310","Root at senesc (SRR5199310)","Root at Senescence stage (SRR5199310)","Root at senesc","Root","Senescence stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199310","SAMN06264150","SRS1937942","PRJNA354681","SRP097728"]
["Leaf at senesc (SRR5199311)","SRR5199311","Leaf at senesc (SRR5199311)","Leaf at Senescence stage (SRR5199311)","Leaf at senesc","Leaf","Senescence stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199311","SAMN06264149","SRS1937943","PRJNA354681","SRP097728"]
["Petiole at senesc (SRR5199312)","SRR5199312","Petiole at senesc (SRR5199312)","Petiole at Senescence stage (SRR5199312)","Petiole at senesc","Petiole","Senescence stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199312","SAMN06264148","SRS1937944","PRJNA354681","SRP097728"]
["Petiole at reprod (SRR5199313)","SRR5199313","Petiole at reprod (SRR5199313)","Petiole at Reproductive stage (SRR5199313)","Petiole at reprod","Petiole","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199313","SAMN06264147","SRS1937945","PRJNA354681","SRP097728"]
["Stem at senesc (SRR5199314)","SRR5199314","Stem at senesc (SRR5199314)","Stem at Senescence stage (SRR5199314)","Stem at senesc","Stem","Senescence stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199314","SAMN06264146","SRS1937946","PRJNA354681","SRP097728"]
["Stem at reprod (SRR5199315)","SRR5199315","Stem at reprod (SRR5199315)","Stem at Reproductive stage (SRR5199315)","Stem at reprod","Stem","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199315","SAMN06264145","SRS1937947","PRJNA354681","SRP097728"]
["Immature pod at reprod (SRR5199316)","SRR5199316","Immature pod at reprod (SRR5199316)","Immature pod at Reproductive stage (SRR5199316)","Immature pod at reprod","Immature pod","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199316","SAMN06264144","SRS1937948","PRJNA354681","SRP097728"]
["Nodule at reprod (SRR5199317)","SRR5199317","Nodule at reprod (SRR5199317)","Nodule at Reproductive stage (SRR5199317)","Nodule at reprod","Nodule","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199317","SAMN06264143","SRS1937949","PRJNA354681","SRP097728"]
["Root at reprod (SRR5199318)","SRR5199318","Root at reprod (SRR5199318)","Root at Reproductive stage (SRR5199318)","Root at reprod","Root","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199318","SAMN06264142","SRS1937950","PRJNA354681","SRP097728"]
["Pistil at reprod (SRR5199319)","SRR5199319","Pistil at reprod (SRR5199319)","Pistil at Reproductive stage (SRR5199319)","Pistil at reprod","Pistil","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199319","SAMN06264141","SRS1937951","PRJNA354681","SRP097728"]
["Stamen at reprod (SRR5199320)","SRR5199320","Stamen at reprod (SRR5199320)","Stamen at Reproductive stage (SRR5199320)","Stamen at reprod","Stamen","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199320","SAMN06264140","SRS1937952","PRJNA354681","SRP097728"]
["Flower at reprod (SRR5199321)","SRR5199321","Flower at reprod (SRR5199321)","Flower at Reproductive stage (SRR5199321)","Flower at reprod","Flower","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199321","SAMN06264139","SRS1937953","PRJNA354681","SRP097728"]
["Bud at reprod (SRR5199322)","SRR5199322","Bud at reprod (SRR5199322)","Bud at Reproductive stage (SRR5199322)","Bud at reprod","Bud","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199322","SAMN06264138","SRS1937954","PRJNA354681","SRP097728"]
["Leaf at reprod (SRR5199323)","SRR5199323","Leaf at reprod (SRR5199323)","Leaf at Reproductive stage (SRR5199323)","Leaf at reprod","Leaf","Reproductive stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199323","SAMN06264137","SRS1937955","PRJNA354681","SRP097728"]
["Leaf at veg (SRR5199324)","SRR5199324","Leaf at veg (SRR5199324)","Leaf at Vegetative stage (SRR5199324)","Leaf at veg","Leaf","Vegetative stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199324","SAMN06264136","SRS1937956","PRJNA354681","SRP097728"]
["Root at veg (SRR5199325)","SRR5199325","Root at veg (SRR5199325)","Root at Vegetative stage (SRR5199325)","Root at veg","Root","Vegetative stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199325","SAMN06264135","SRS1937957","PRJNA354681","SRP097728"]
["Nodule at veg (SRR5199326)","SRR5199326","Nodule at veg (SRR5199326)","Nodule at Vegetative stage (SRR5199326)","Nodule at veg","Nodule","Vegetative stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199326","SAMN06264134","SRS1937958","PRJNA354681","SRP097728"]
["Shoot apical meristem at veg (SRR5199327)","SRR5199327","Shoot apical meristem at veg (SRR5199327)","Shoot apical meristem at Vegetative stage (SRR5199327)","Shoot apical meristem at veg","Shoot apical meristem","Vegetative stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199327","SAMN06264133","SRS1937959","PRJNA354681","SRP097728"]
["Root at seedl (SRR5199328)","SRR5199328","Root at seedl (SRR5199328)","Root at Seedling stage (SRR5199328)","Root at seedl","Root","Seedling stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199328","SAMN06264132","SRS1937960","PRJNA354681","SRP097728"]
["Shoot at seedl (SRR5199329)","SRR5199329","Shoot at seedl (SRR5199329)","Shoot at Seedling stage (SRR5199329)","Shoot at seedl","Shoot","Seedling stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199329","SAMN06264131","SRS1937961","PRJNA354681","SRP097728"]
["Embryo at germ (SRR5199330)","SRR5199330","Embryo at germ (SRR5199330)","Embryo at Germinal stage (SRR5199330)","Embryo at germ","Embryo","Germinal stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199330","SAMN06264130","SRS1937962","PRJNA354681","SRP097728"]
["Hypocotyl at germ (SRR5199331)","SRR5199331","Hypocotyl at germ (SRR5199331)","Hypocotyl at Germinal stage (SRR5199331)","Hypocotyl at germ","Hypocotyl","Germinal stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199331","SAMN06264129","SRS1937963","PRJNA354681","SRP097728"]
["Radicle at germ (SRR5199332)","SRR5199332","Radicle at germ (SRR5199332)","Radicle at Germinal stage (SRR5199332)","Radicle at germ","Radicle","Germinal stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199332","SAMN06264128","SRS1937964","PRJNA354681","SRP097728"]
["Cotyledons at germ (SRR5199333)","SRR5199333","Cotyledons at germ (SRR5199333)","Cotyledons at Germinal stage (SRR5199333)","Cotyledons at germ","Cotyledons","Germinal stage",null,"Cajanus cajan","ICPL87119","Asha(ICPL87119)",null,"SRR5199333","SAMN06264127","SRS1937965","PRJNA354681","SRP097728"]

{"sheet":"expdesign","index":3,"n_rows":12,"n_cols":4,"rows_kept":12}
["#EXPT DESIGN (This page is not yet fully thought out)"]
[]
["#","#Factors","Total","Factor Names; ':' separated; in order"]
[]
[]
["#","#Factor Levels"]
["#","#Factor Name","Total levels","Factor Level Names; ':' separated; in order"]
[]
[]
[]
["#","Treatments (Factor combinations)"]
["#","Treatment Name","Reps"]

{"sheet":"method","index":4,"n_rows":13,"n_cols":3,"rows_kept":13}
["#METHOD"]
["#","#Name:Title"]
[null,"NAME","TPM values per gene from HTSeq raw read counts on exons"]
["#","#Shortname: For label in website"]
[null,"SHORTNAME","TPM from HTSeq Count"]
["#","#Version if any"]
[null,"VERSION"]
["#","#Description: for LIS website"]
[null,"DESCRIPTION","TPM values calculated from HTSeq read counts mapped to exons only per gene.  "]
["#","#Details:"]
[null,"DETAILS","Reads were mapped to reference genome using GSNAP.  HTSeq counts were generated from read alignments only to exons aggregated over a gene. TPM was calculated from these exonic read counts."]
["#","#Notes: For curation, private"]
[null,"NOTES","**Provide later: GSNAP parameters and ref. HTSeq count parameters and ref. Refine description and details. TPM explain and reference."]

{"sheet":"notes","index":5,"n_rows":71,"n_cols":28,"rows_kept":71}
[null,"Notes about this file (Not used for loading)"]
[]
[]
[null,"Pasted straight from SraRunTable.txt:"]
[null,"AvgSpotLen_l","BioSample_s","Experiment_s","Instrument_s","Library_Name_s","MBases_l","MBytes_l","Run_s","SRA_Sample_s","Sample_Name_s","dev_stage_s","tissue_s","Assay_Type_s","BioProject_s","BioSampleModel_s","Consent_s","InsertSize_l","LibraryLayout_s","LibrarySelection_s","LibrarySource_s","LoadDate_s","Organism_s","Platform_s","ReleaseDate_s","SRA_Study_s","cultivar_s","geo_loc_name_s"]
[null,190,"SAMN06264156","SRX2514527","Illumina HiSeq 2500","GEA_PP_30",4010,2668,"SRR5199304","SRS1937936","GEA_PP_30","Reproductive stage","Mature seed","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,189,"SAMN06264155","SRX2514528","Illumina HiSeq 2500","GEA_PP_29",4793,3215,"SRR5199305","SRS1937937","GEA_PP_29","Reproductive stage","Immature seed","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264154","SRX2514529","Illumina HiSeq 2500","GEA_PP_28",6104,4315,"SRR5199306","SRS1937938","GEA_PP_28","Reproductive stage","Mature pod","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264153","SRX2514530","Illumina HiSeq 2500","GEA_PP_27",5268,3712,"SRR5199307","SRS1937939","GEA_PP_27","Reproductive stage","Shoot apical meristem","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264152","SRX2514531","Illumina HiSeq 2500","GEA_PP_26",7274,5132,"SRR5199308","SRS1937940","GEA_PP_26","Reproductive stage","Sepal","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264151","SRX2514532","Illumina HiSeq 2500","GEA_PP_25",6164,4344,"SRR5199309","SRS1937941","GEA_PP_25","Reproductive stage","Petal","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264150","SRX2514533","Illumina HiSeq 2500","GEA_PP_24",6587,4655,"SRR5199310","SRS1937942","GEA_PP_24","Senescence stage","Root","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264149","SRX2514534","Illumina HiSeq 2500","GEA_PP_23",7430,5106,"SRR5199311","SRS1937943","GEA_PP_23","Senescence stage","Leaf","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264148","SRX2514535","Illumina HiSeq 2500","GEA_PP_22",6758,4653,"SRR5199312","SRS1937944","GEA_PP_22","Senescence stage","Petiole","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264147","SRX2514536","Illumina HiSeq 2500","GEA_PP_21",6636,4565,"SRR5199313","SRS1937945","GEA_PP_21","Reproductive stage","Petiole","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264146","SRX2514537","Illumina HiSeq 2000","GEA_PP_20",2599,1504,"SRR5199314","SRS1937946","GEA_PP_20","Senescence stage","Stem","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264145","SRX2514538","Illumina HiSeq 2000","GEA_PP_19",3005,1760,"SRR5199315","SRS1937947","GEA_PP_19","Reproductive stage","Stem","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264144","SRX2514539","Illumina HiSeq 2000","GEA_PP_18",2689,1747,"SRR5199316","SRS1937948","GEA_PP_18","Reproductive stage","Immature pod","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264143","SRX2514540","Illumina HiSeq 2000","GEA_PP_17",2948,1919,"SRR5199317","SRS1937949","GEA_PP_17","Reproductive stage","Nodule","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264142","SRX2514541","Illumina HiSeq 2000","GEA_PP_16",3294,2141,"SRR5199318","SRS1937950","GEA_PP_16","Reproductive stage","Root","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264141","SRX2514542","Illumina HiSeq 2000","GEA_PP_15",2602,1687,"SRR5199319","SRS1937951","GEA_PP_15","Reproductive stage","Pistil","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264140","SRX2514543","Illumina HiSeq 2000","GEA_PP_14",2499,1636,"SRR5199320","SRS1937952","GEA_PP_14","Reproductive stage","Stamen","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264139","SRX2514544","Illumina HiSeq 2000","GEA_PP_13",3120,1804,"SRR5199321","SRS1937953","GEA_PP_13","Reproductive stage","Flower","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264138","SRX2514545","Illumina HiSeq 2000","GEA_PP_12",2436,1582,"SRR5199322","SRS1937954","GEA_PP_12","Reproductive stage","Bud","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264137","SRX2514546","Illumina HiSeq 2000","GEA_PP_11",2831,1836,"SRR5199323","SRS1937955","GEA_PP_11","Reproductive stage","Leaf","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264136","SRX2514547","Illumina HiSeq 2000","GEA_PP_10",1845,1209,"SRR5199324","SRS1937956","GEA_PP_10","Vegetative stage","Leaf","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264135","SRX2514548","Illumina HiSeq 2000","GEA_PP_09",1570,1021,"SRR5199325","SRS1937957","GEA_PP_09","Vegetative stage","Root","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264134","SRX2514549","Illumina HiSeq 2000","GEA_PP_08",2406,1554,"SRR5199326","SRS1937958","GEA_PP_08","Vegetative stage","Nodule","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264133","SRX2514550","Illumina HiSeq 2000","GEA_PP_07",2329,1675,"SRR5199327","SRS1937959","GEA_PP_07","Vegetative stage","Shoot apical meristem","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,199,"SAMN06264132","SRX2514551","Illumina HiSeq 2000","GEA_PP_06",2370,1553,"SRR5199328","SRS1937960","GEA_PP_06","Seedling stage","Root","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264131","SRX2514552","Illumina HiSeq 2000","GEA_PP_05",1920,1244,"SRR5199329","SRS1937961","GEA_PP_05","Seedling stage","Shoot","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264130","SRX2514553","Illumina HiSeq 2000","GEA_PP_04",1626,1046,"SRR5199330","SRS1937962","GEA_PP_04","Germinal stage","Embryo","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264129","SRX2514554","Illumina HiSeq 2000","GEA_PP_03",3295,1914,"SRR5199331","SRS1937963","GEA_PP_03","Germinal stage","Hypocotyl","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,200,"SAMN06264128","SRX2514555","Illumina HiSeq 2000","GEA_PP_02",2188,1413,"SRR5199332","SRS1937964","GEA_PP_02","Germinal stage","Radical","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[null,198,"SAMN06264127","SRX2514556","Illumina HiSeq 2000","GEA_PP_01",3302,2364,"SRR5199333","SRS1937965","GEA_PP_01","Germinal stage","Cotyledons","RNA-Seq","PRJNA354681","Plant","public",0,"PAIRED","RANDOM","TRANSCRIPTOMIC","2017-01-25","Cajanus cajan","ILLUMINA","2017-07-31","SRP097728","Asha (ICPL 87119)","India"]
[]
[]
[]
[]
[null,"CONSTRUCTS:"]
[]
[null,"Reproductive stage","Mature seed","at","reprod","SRR5199304",{"$f":"CONCATENATE(C42,\" \",D42,\" \",E42)","v":"Mature seed at reprod"},{"$f":"CONCATENATE(C42,\" \",D42,\" \",B42)","v":"Mature seed at Reproductive stage"},{"$f":"CONCATENATE(G42,\" (\",F42,\")\")","v":"Mature seed at reprod (SRR5199304)"},{"$f":"CONCATENATE(H42,\" (\",F42,\")\")","v":"Mature seed at Reproductive stage (SRR5199304)"}]
[null,"Reproductive stage","Immature seed","at","reprod","SRR5199305","Immature seed at reprod","Immature seed at Reproductive stage",{"$f":"CONCATENATE(G43,\" (\",F43,\")\")","v":"Immature seed at reprod (SRR5199305)"},{"$f":"CONCATENATE(H43,\" (\",F43,\")\")","v":"Immature seed at Reproductive stage (SRR5199305)"}]
[null,"Reproductive stage","Mature pod","at","reprod","SRR5199306","Mature pod at reprod","Mature pod at Reproductive stage","Mature pod at reprod (SRR5199306)","Mature pod at Reproductive stage (SRR5199306)"]
[null,"Reproductive stage","Shoot apical meristem","at","reprod","SRR5199307","Shoot apical meristem at reprod","Shoot apical meristem at Reproductive stage","Shoot apical meristem at reprod (SRR5199307)","Shoot apical meristem at Reproductive stage (SRR5199307)"]
[null,"Reproductive stage","Sepal","at","reprod","SRR5199308","Sepal at reprod","Sepal at Reproductive stage","Sepal at reprod (SRR5199308)","Sepal at Reproductive stage (SRR5199308)"]
[null,"Reproductive stage","Petal","at","reprod","SRR5199309","Petal at reprod","Petal at Reproductive stage","Petal at reprod (SRR5199309)","Petal at Reproductive stage (SRR5199309)"]
[null,"Senescence stage","Root","at","senesc","SRR5199310","Root at senesc","Root at Senescence stage","Root at senesc (SRR5199310)","Root at Senescence stage (SRR5199310)"]
[null,"Senescence stage","Leaf","at","senesc","SRR5199311","Leaf at senesc","Leaf at Senescence stage","Leaf at senesc (SRR5199311)","Leaf at Senescence stage (SRR5199311)"]
[null,"Senescence stage","Petiole","at","senesc","SRR5199312","Petiole at senesc","Petiole at Senescence stage","Petiole at senesc (SRR5199312)","Petiole at Senescence stage (SRR5199312)"]
[null,"Reproductive stage","Petiole","at","reprod","SRR5199313","Petiole at reprod","Petiole at Reproductive stage","Petiole at reprod (SRR5199313)","Petiole at Reproductive stage (SRR5199313)"]
[null,"Senescence stage","Stem","at","senesc","SRR5199314","Stem at senesc","Stem at Senescence stage","Stem at senesc (SRR5199314)","Stem at Senescence stage (SRR5199314)"]
[null,"Reproductive stage","Stem","at","reprod","SRR5199315","Stem at reprod","Stem at Reproductive stage","Stem at reprod (SRR5199315)","Stem at Reproductive stage (SRR5199315)"]
[null,"Reproductive stage","Immature pod","at","reprod","SRR5199316","Immature pod at reprod","Immature pod at Reproductive stage","Immature pod at reprod (SRR5199316)","Immature pod at Reproductive stage (SRR5199316)"]
[null,"Reproductive stage","Nodule","at","reprod","SRR5199317","Nodule at reprod","Nodule at Reproductive stage","Nodule at reprod (SRR5199317)","Nodule at Reproductive stage (SRR5199317)"]
[null,"Reproductive stage","Root","at","reprod","SRR5199318","Root at reprod","Root at Reproductive stage","Root at reprod (SRR5199318)","Root at Reproductive stage (SRR5199318)"]
[null,"Reproductive stage","Pistil","at","reprod","SRR5199319","Pistil at reprod","Pistil at Reproductive stage","Pistil at reprod (SRR5199319)","Pistil at Reproductive stage (SRR5199319)"]
[null,"Reproductive stage","Stamen","at","reprod","SRR5199320","Stamen at reprod","Stamen at Reproductive stage","Stamen at reprod (SRR5199320)","Stamen at Reproductive stage (SRR5199320)"]
[null,"Reproductive stage","Flower","at","reprod","SRR5199321","Flower at reprod","Flower at Reproductive stage","Flower at reprod (SRR5199321)","Flower at Reproductive stage (SRR5199321)"]
[null,"Reproductive stage","Bud","at","reprod","SRR5199322","Bud at reprod","Bud at Reproductive stage","Bud at reprod (SRR5199322)","Bud at Reproductive stage (SRR5199322)"]
[null,"Reproductive stage","Leaf","at","reprod","SRR5199323","Leaf at reprod","Leaf at Reproductive stage","Leaf at reprod (SRR5199323)","Leaf at Reproductive stage (SRR5199323)"]
[null,"Vegetative stage","Leaf","at","veg","SRR5199324","Leaf at veg","Leaf at Vegetative stage","Leaf at veg (SRR5199324)","Leaf at Vegetative stage (SRR5199324)"]
[null,"Vegetative stage","Root","at","veg","SRR5199325","Root at veg","Root at Vegetative stage","Root at veg (SRR5199325)","Root at Vegetative stage (SRR5199325)"]
[null,"Vegetative stage","Nodule","at","veg","SRR5199326","Nodule at veg","Nodule at Vegetative stage","Nodule at veg (SRR5199326)","Nodule at Vegetative stage (SRR5199326)"]
[null,"Vegetative stage","Shoot apical meristem","at","veg","SRR5199327","Shoot apical meristem at veg","Shoot apical meristem at Vegetative stage","Shoot apical meristem at veg (SRR5199327)","Shoot apical meristem at Vegetative stage (SRR5199327)"]
[null,"Seedling stage","Root","at","seedl","SRR5199328","Root at seedl","Root at Seedling stage","Root at seedl (SRR5199328)","Root at Seedling stage (SRR5199328)"]
[null,"Seedling stage","Shoot","at","seedl","SRR5199329","Shoot at seedl","Shoot at Seedling stage","Shoot at seedl (SRR5199329)","Shoot at Seedling stage (SRR5199329)"]
[null,"Germinal stage","Embryo","at","germ","SRR5199330","Embryo at germ","Embryo at Germinal stage","Embryo at germ (SRR5199330)","Embryo at Germinal stage (SRR5199330)"]
[null,"Germinal stage","Hypocotyl","at","germ","SRR5199331","Hypocotyl at germ","Hypocotyl at Germinal stage","Hypocotyl at germ (SRR5199331)","Hypocotyl at Germinal stage (SRR5199331)"]
[null,"Germinal stage","Radicle","at","germ","SRR5199332","Radicle at germ","Radicle at Germinal stage","Radicle at germ (SRR5199332)","Radicle at Germinal stage (SRR5199332)"]
[null,"Germinal stage","Cotyledons","at","germ","SRR5199333","Cotyledons at germ","Cotyledons at Germinal stage","Cotyledons at germ (SRR5199333)","Cotyledons at Germinal stage (SRR5199333)"]