---
identifier: Tifrunner.tcp1.sSQ6

provenance: "The files in this directory originated from http://peanutbase.org. There is also a corresponding transcriptome assembly at GenBank.
The PeanutBase repository is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo, PeanutBase, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo, PeanutBase, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."

source: "http://peanutbase.org/"

synopsis: Transcriptome assembly, gene expression

scientific_name: Arachis hypogaea

taxid: 3818

bioproject: PRJNA291488

scientific_name_abbrev: arahy

genotype:
  - Tifrunner

description: "Files in this directory included the Trinity genome guided transcriptome assemblies of the genotype mentioned above. Assembly method: Used the genome-guided approach in the assembly pipeline from Trinity v. 2.0.6 r2013-08-14. Normalized reads were mapped to the A. duranensis (A) and A. ipaensis (B) genome separately using GSNAP with the following parameters: '-N 1 -w 10,000 -n 20 -t 6 -nofails'. Once the reads were mapped, the SAM file was run through the genome-guided pipeline.The assembled transcripts were concatenated together into one assembly. Information of whether loci were derived from A. duranensis or A. ipaensis was retained."

genbank_accession: GDKN00000000.1

original_file_creation_date: "2015-11-02"

local_file_creation_date: "2016-08-26"

publication_doi: 10.3389/fpls.2016.01446

dataset_release_date: "2016-08-26"

publication_title: "A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea"

contributors: "Josh Clevenger, Ye Chu, Brain Scheffler, Peggy Ozias-Akins"

data_curators: Steven Cannon, Jacqueline D. Campbell

public_access_level: public

license: Open

keywords: Transcriptome, gene expression, peanut, Arachis hypogaea

citation: "Clevenger J, Chu Y, Scheffler B and Ozias-Akins P (2016) A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea. Frontier Plant Science 7:1446. doi:https://doi.org/10.3389/fpls.2016.01446"